CDS

Accession Number TCMCG051C41101
gbkey CDS
Protein Id XP_006374116.1
Location complement(join(1236188..1236334,1236506..1236652,1237040..1237168,1237789..1237866,1238065..1238223,1238599..1238670,1239404..1239568,1240101..1240197,1240362..1240504,1241099..1241203,1241333..1241446,1241535..1241708))
Gene LOC7453827
GeneID 7453827
Organism Populus trichocarpa

Protein

Length 509aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA17973
db_source XM_006374054.2
Definition splicing factor SF3a60 homolog [Populus trichocarpa]

EGGNOG-MAPPER Annotation

COG_category A
Description splicing factor 3A subunit
KEGG_TC -
KEGG_Module M00352        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko03041        [VIEW IN KEGG]
KEGG_ko ko:K12827        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03040        [VIEW IN KEGG]
map03040        [VIEW IN KEGG]
GOs GO:0000245        [VIEW IN EMBL-EBI]
GO:0000375        [VIEW IN EMBL-EBI]
GO:0000377        [VIEW IN EMBL-EBI]
GO:0000389        [VIEW IN EMBL-EBI]
GO:0000398        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0005681        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005829        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006376        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006397        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008380        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016071        [VIEW IN EMBL-EBI]
GO:0016604        [VIEW IN EMBL-EBI]
GO:0016607        [VIEW IN EMBL-EBI]
GO:0022607        [VIEW IN EMBL-EBI]
GO:0022613        [VIEW IN EMBL-EBI]
GO:0022618        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034622        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043900        [VIEW IN EMBL-EBI]
GO:0043933        [VIEW IN EMBL-EBI]
GO:0044085        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044451        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045595        [VIEW IN EMBL-EBI]
GO:0045694        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050793        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0051239        [VIEW IN EMBL-EBI]
GO:0065003        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0071013        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071826        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1902494        [VIEW IN EMBL-EBI]
GO:1990904        [VIEW IN EMBL-EBI]
GO:2000026        [VIEW IN EMBL-EBI]
GO:2000241        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGTCGTCGACTCTATTAGAGGTGACTCGAGCCTCTCACGAGGAAGCAGAGAGACTCGAACGACTTATCGTTAAAGATCTCCAAAATGAACCAGCAAACAACAAGGACCGTCTTTTTCAAAGCCACCGTGTTCGTAACATGATCGAAAATATCATTGCCACTACTGAGAAACTCGTTGAGGTTTATGAAGATAGAGATAATGCGAGGAAAGATGAGATTGCGGCGCTTGGTGGACAAACGGCGACCGGAACCAATGTGTTTAGTGCTTTTTATGATAGATTAAAAGAGATTCGTGAGTATCATAGAAGGCATCCAGCGGCGCGTGTGGTTGATGCTAATGAGGATTATGAGGCAATGCTTAAAGAGGAACCAGTTATTGAGTTTACTGGTGAGGAAGCATTTGGGAAATACTTAGACATGCATGAATTGTATAACCAGTTCAATAATTTAAAATTCGAGAAGCCTATTGAATACTCTACTTACCTTGACATTTTCTCCCAACCACATAATTTACCCCGTAAAGTGAAGTTTACAAGGCAATACAGGGAATACATGGAGAATCTACTTGAATATTTATTTTATTTTTTCCAGAGGACAGAGCCCTTGCAAGATCTTGATAGGATTTTGTCAAAGGTTACTACTGAATTTGAAGAGCAATGGGAAAATGGCACGGTACAAGGATGGGAAAAGAATGCTCAAGAAAATGGGCATGTGCCAGCTGATCATACTGTTATTGATCTTGATTTTTACAGCACTGTTGAGGAGCTTAAAGAAGTGGGCCCTGAAAAATTGAAGGAGGCATTGGCTGCATTGGGGCTCAAGAGTGGCGGTACCATTCAGCAGCGTGCTGAAAGGCTTTTTCTCACGAAGCATACACCTCTTGAAAAGTTGGACAAGAAACATTTTGTGAAAGGTTCATGTGCATCAGAACCGAATGGAGGTGCTGTGAACTCAAAGGAAGTTGTCAATTCAAAAGAAATTGCCCTGATGGAGACCAAAATGAATAAATTGTGTGATTTACTGGATGAGACAATTGTACGGACAAAAGAAAATATTGTGAAGAAGCAGGCTTTGACATATGATGAAATGGAAGCAGAACGTGAGGAGGAAGAGACACAGGCTGACACTGAAAGTGACGATGAAGAACAACAGATTTACAATCCCCTCAAGTTGCCAATGGGTTGGGATGGGAAGCCTATACCCTACTGGCTGTATAAACTTCATGGTCTTGGTCAGGAACTTAAATGCGAGATATGTGGGAACTATAGTTACTGGGGTCGTAGAGCGTTTGAGCGGCATTTCAAGGAATGGCGTCATCAGCATGGAATGCGTTGCCTTGGCATCCCAAACACCAAGAACTTCAATGAGATCACATCGATCGAGGAAGCACAGGAATTATGGAAGAGGATACAAGCGCGGCAAGGAGTGAACAAGTGGCGCCCAGATCTTGAGGAAGAATATGAAGATAAAGAGGGCAACATTTACAATAAAAAGACATATACTGATCTGCAGCGCCAGGGACTGATTTGA
Protein:  
MSSTLLEVTRASHEEAERLERLIVKDLQNEPANNKDRLFQSHRVRNMIENIIATTEKLVEVYEDRDNARKDEIAALGGQTATGTNVFSAFYDRLKEIREYHRRHPAARVVDANEDYEAMLKEEPVIEFTGEEAFGKYLDMHELYNQFNNLKFEKPIEYSTYLDIFSQPHNLPRKVKFTRQYREYMENLLEYLFYFFQRTEPLQDLDRILSKVTTEFEEQWENGTVQGWEKNAQENGHVPADHTVIDLDFYSTVEELKEVGPEKLKEALAALGLKSGGTIQQRAERLFLTKHTPLEKLDKKHFVKGSCASEPNGGAVNSKEVVNSKEIALMETKMNKLCDLLDETIVRTKENIVKKQALTYDEMEAEREEEETQADTESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQELKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAQELWKRIQARQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI